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Class: UndocumentedAllele

Default UndocumentedAllele description

URI: https://github.com/vdjserver/vdjserver-airr-schema/UndocumentedAllele

 classDiagram
    class UndocumentedAllele
    click UndocumentedAllele href "../UndocumentedAllele/"
      AIRRStandards <|-- UndocumentedAllele
        click AIRRStandards href "../AIRRStandards/"

      UndocumentedAllele : allele_name

      UndocumentedAllele : phasing

      UndocumentedAllele : sequence

Inheritance

Slots

Name Cardinality and Range Description Inheritance
allele_name 0..1
String		 Allele name as allocated by the inference pipeline direct
sequence 0..1
String		 direct
phasing 0..1
Integer		 Chromosomal phasing indicator direct

Usages

used by used in type used
Genotype undocumented_alleles range UndocumentedAllele

Identifier and Mapping Information

Schema Source

Mappings

Mapping Type Mapped Value
self https://github.com/vdjserver/vdjserver-airr-schema/UndocumentedAllele
native https://github.com/vdjserver/vdjserver-airr-schema/UndocumentedAllele

LinkML Source

Direct

name: UndocumentedAllele
description: Default UndocumentedAllele description
from_schema: https://github.com/vdjserver/vdjserver-airr-schema
is_a: AIRRStandards
slots:
- allele_name
- sequence
- phasing

Induced

name: UndocumentedAllele
description: Default UndocumentedAllele description
from_schema: https://github.com/vdjserver/vdjserver-airr-schema
is_a: AIRRStandards
attributes:
  allele_name:
    name: allele_name
    description: Allele name as allocated by the inference pipeline
    from_schema: https://github.com/vdjserver/vdjserver-airr-schema
    rank: 1000
    owner: UndocumentedAllele
    domain_of:
    - UndocumentedAllele
    range: string
  sequence:
    name: sequence
    from_schema: https://github.com/vdjserver/vdjserver-airr-schema
    rank: 1000
    owner: UndocumentedAllele
    domain_of:
    - RearrangedSequence
    - UnrearrangedSequence
    - AlleleDescription
    - UndocumentedAllele
    - Rearrangement
    range: string
  phasing:
    name: phasing
    annotations:
      nullable:
        tag: nullable
        value: true
    description: Chromosomal phasing indicator. Alleles with the same value are inferred
      to be located on the  same chromosome.
    from_schema: https://github.com/vdjserver/vdjserver-airr-schema
    rank: 1000
    owner: UndocumentedAllele
    domain_of:
    - DocumentedAllele
    - UndocumentedAllele
    - DeletedGene
    range: integer