Class: DocumentedAllele

Default DocumentedAllele description

URI: https://github.com/vdjserver/vdjserver-airr-schema/DocumentedAllele

 classDiagram
    class DocumentedAllele
    click DocumentedAllele href "../DocumentedAllele/"
      AIRRStandards <|-- DocumentedAllele
        click AIRRStandards href "../AIRRStandards/"

      DocumentedAllele : germline_set_ref

      DocumentedAllele : label

      DocumentedAllele : phasing

Inheritance

AIRRStandards
- DocumentedAllele

Slots

Name	Cardinality and Range	Description	Inheritance
label	0..1 String		direct
germline_set_ref	0..1 String		direct
phasing	0..1 Integer	Chromosomal phasing indicator	direct

Usages

used by	used in	type	used
Genotype	documented_alleles	range	DocumentedAllele

Identifier and Mapping Information

Schema Source

from schema: https://github.com/vdjserver/vdjserver-airr-schema

Mappings

Mapping Type	Mapped Value
self	https://github.com/vdjserver/vdjserver-airr-schema/DocumentedAllele
native	https://github.com/vdjserver/vdjserver-airr-schema/DocumentedAllele

LinkML Source

Direct

name: DocumentedAllele
description: Default DocumentedAllele description
from_schema: https://github.com/vdjserver/vdjserver-airr-schema
is_a: AIRRStandards
slots:
- label
- germline_set_ref
- phasing

Induced

name: DocumentedAllele
description: Default DocumentedAllele description
from_schema: https://github.com/vdjserver/vdjserver-airr-schema
is_a: AIRRStandards
attributes:
  label:
    name: label
    from_schema: https://github.com/vdjserver/vdjserver-airr-schema
    rank: 1000
    owner: DocumentedAllele
    domain_of:
    - AlleleDescription
    - DocumentedAllele
    - DeletedGene
    range: string
  germline_set_ref:
    name: germline_set_ref
    from_schema: https://github.com/vdjserver/vdjserver-airr-schema
    rank: 1000
    owner: DocumentedAllele
    domain_of:
    - GermlineSet
    - DocumentedAllele
    - DeletedGene
    - DataProcessing
    range: string
  phasing:
    name: phasing
    annotations:
      nullable:
        tag: nullable
        value: true
    description: Chromosomal phasing indicator. Alleles with the same value are inferred
      to be located on the  same chromosome.
    from_schema: https://github.com/vdjserver/vdjserver-airr-schema
    rank: 1000
    owner: DocumentedAllele
    domain_of:
    - DocumentedAllele
    - UndocumentedAllele
    - DeletedGene
    range: integer