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Class: Diagnosis

Default Diagnosis description

URI: https://github.com/vdjserver/vdjserver-airr-schema/Diagnosis

 classDiagram
    class Diagnosis
    click Diagnosis href "../Diagnosis/"
      AIRRStandards <|-- Diagnosis
        click AIRRStandards href "../AIRRStandards/"

      Diagnosis : diagnosis_timepoint





        Diagnosis --> "0..1" TimePoint : diagnosis_timepoint
        click TimePoint href "../TimePoint/"



      Diagnosis : disease_diagnosis





        Diagnosis --> "0..1" DiseaseDiagnosisOntology : disease_diagnosis
        click DiseaseDiagnosisOntology href "../DiseaseDiagnosisOntology/"



      Diagnosis : disease_length





        Diagnosis --> "0..1" TimeQuantity : disease_length
        click TimeQuantity href "../TimeQuantity/"



      Diagnosis : disease_stage

      Diagnosis : immunogen

      Diagnosis : intervention

      Diagnosis : medical_history

      Diagnosis : prior_therapies

      Diagnosis : study_group_description

Inheritance

Slots

Name Cardinality and Range Description Inheritance
study_group_description 0..1
String		 Designation of study arm to which the subject is assigned to direct
diagnosis_timepoint 0..1
TimePoint		 Time point for the diagnosis direct
disease_diagnosis 0..1
DiseaseDiagnosisOntology		 Diagnosis of subject direct
disease_length 0..1
TimeQuantity		 Time duration between initial diagnosis and current intervention direct
disease_stage 0..1
String		 Stage of disease at current intervention direct
prior_therapies 0..1
String		 List of all relevant previous therapies applied to subject for treatment of `... direct
immunogen 0..1
String		 Antigen, vaccine or drug applied to subject at this intervention direct
intervention 0..1
String		 Description of intervention direct
medical_history 0..1
String		 Medical history of subject that is relevant to assess the course of disease a... direct

Usages

used by used in type used
Subject diagnosis range Diagnosis

Identifier and Mapping Information

Schema Source

Mappings

Mapping Type Mapped Value
self https://github.com/vdjserver/vdjserver-airr-schema/Diagnosis
native https://github.com/vdjserver/vdjserver-airr-schema/Diagnosis

LinkML Source

Direct

name: Diagnosis
description: Default Diagnosis description
from_schema: https://github.com/vdjserver/vdjserver-airr-schema
is_a: AIRRStandards
slots:
- study_group_description
- diagnosis_timepoint
- disease_diagnosis
- disease_length
- disease_stage
- prior_therapies
- immunogen
- intervention
- medical_history

Induced

name: Diagnosis
description: Default Diagnosis description
from_schema: https://github.com/vdjserver/vdjserver-airr-schema
is_a: AIRRStandards
attributes:
  study_group_description:
    name: study_group_description
    annotations:
      nullable:
        tag: nullable
        value: true
    description: Designation of study arm to which the subject is assigned to
    from_schema: https://github.com/vdjserver/vdjserver-airr-schema
    rank: 1000
    owner: Diagnosis
    domain_of:
    - Diagnosis
    range: string
  diagnosis_timepoint:
    name: diagnosis_timepoint
    annotations:
      nullable:
        tag: nullable
        value: true
    description: Time point for the diagnosis
    from_schema: https://github.com/vdjserver/vdjserver-airr-schema
    rank: 1000
    owner: Diagnosis
    domain_of:
    - Diagnosis
    range: TimePoint
  disease_diagnosis:
    name: disease_diagnosis
    annotations:
      nullable:
        tag: nullable
        value: true
    description: Diagnosis of subject
    from_schema: https://github.com/vdjserver/vdjserver-airr-schema
    rank: 1000
    owner: Diagnosis
    domain_of:
    - Diagnosis
    range: DiseaseDiagnosisOntology
  disease_length:
    name: disease_length
    annotations:
      nullable:
        tag: nullable
        value: true
    description: Time duration between initial diagnosis and current intervention
    from_schema: https://github.com/vdjserver/vdjserver-airr-schema
    rank: 1000
    owner: Diagnosis
    domain_of:
    - Diagnosis
    range: TimeQuantity
  disease_stage:
    name: disease_stage
    annotations:
      nullable:
        tag: nullable
        value: true
    description: Stage of disease at current intervention
    from_schema: https://github.com/vdjserver/vdjserver-airr-schema
    rank: 1000
    owner: Diagnosis
    domain_of:
    - Diagnosis
    range: string
  prior_therapies:
    name: prior_therapies
    annotations:
      nullable:
        tag: nullable
        value: true
    description: List of all relevant previous therapies applied to subject for treatment
      of `Diagnosis`
    from_schema: https://github.com/vdjserver/vdjserver-airr-schema
    rank: 1000
    owner: Diagnosis
    domain_of:
    - Diagnosis
    range: string
  immunogen:
    name: immunogen
    annotations:
      nullable:
        tag: nullable
        value: true
    description: Antigen, vaccine or drug applied to subject at this intervention
    from_schema: https://github.com/vdjserver/vdjserver-airr-schema
    rank: 1000
    owner: Diagnosis
    domain_of:
    - Diagnosis
    range: string
  intervention:
    name: intervention
    annotations:
      nullable:
        tag: nullable
        value: true
    description: Description of intervention
    from_schema: https://github.com/vdjserver/vdjserver-airr-schema
    rank: 1000
    owner: Diagnosis
    domain_of:
    - Diagnosis
    range: string
  medical_history:
    name: medical_history
    annotations:
      nullable:
        tag: nullable
        value: true
    description: Medical history of subject that is relevant to assess the course
      of disease and/or treatment
    from_schema: https://github.com/vdjserver/vdjserver-airr-schema
    rank: 1000
    owner: Diagnosis
    domain_of:
    - Diagnosis
    range: string