Slot: sequence_alignment

Aligned portion of query sequence, including any indel corrections or numbering spacers, such as IMGT-gaps. Typically, this will include only the V(D)J region, but that is not a requirement.

URI: https://github.com/vdjserver/vdjserver-airr-schema/sequence_alignment

Applicable Classes

Name	Description	Modifies Slot
Rearrangement	Default Rearrangement description	no

Properties

Type and Range

Property	Value
Range	String
Domain Of	Rearrangement

Cardinality and Requirements

Property	Value

Identifier and Mapping Information

Schema Source

• from schema: https://github.com/vdjserver/vdjserver-airr-schema

Mappings

Mapping Type	Mapped Value
self	https://github.com/vdjserver/vdjserver-airr-schema/sequence_alignment
native	https://github.com/vdjserver/vdjserver-airr-schema/sequence_alignment

LinkML Source

name: sequence_alignment
description: Aligned portion of query sequence, including any indel corrections or
  numbering spacers, such as IMGT-gaps. Typically, this will include only the V(D)J
  region, but that is not a requirement.
from_schema: https://github.com/vdjserver/vdjserver-airr-schema
rank: 1000
domain_of:
- Rearrangement
range: string