Slot: repertoire_type

Repertoire type (source). Most often the type should be "observed," meaning it corresponds to an actual physical sample that was sequenced. Other allowed values are "simulated," i.e. the Rearrangements were generated in silico and there is no linked Subject/Sample metadata, and "inferred" for Rearrangements that are phylogenetically reconstructed from observed sequences. Inferred Repertoires should point to the same Subject/Sample metadata as the corresponding physical Repertoires.

URI: rdf:type

Applicable Classes

Name	Description	Modifies Slot
Repertoire	Default Repertoire description	no

Properties

Type and Range

Property	Value
Range	RepertoireTypeEnum
Domain Of	Repertoire
Slot URI	rdf:type

Cardinality and Requirements

Property	Value

Identifier and Mapping Information

Annotations

property	value
nullable	True

Schema Source

• from schema: https://github.com/vdjserver/vdjserver-airr-schema

Mappings

Mapping Type	Mapped Value
self	rdf:type
native	https://github.com/vdjserver/vdjserver-airr-schema/repertoire_type

LinkML Source

name: repertoire_type
annotations:
  nullable:
    tag: nullable
    value: true
description: Repertoire type (source). Most often the type should be "observed," meaning
  it corresponds to an actual physical sample that was sequenced. Other allowed values
  are "simulated," i.e. the Rearrangements were generated in silico and there is no
  linked Subject/Sample metadata, and "inferred" for Rearrangements that are phylogenetically
  reconstructed from observed sequences. Inferred Repertoires should point to the
  same Subject/Sample metadata as the corresponding physical Repertoires.
from_schema: https://github.com/vdjserver/vdjserver-airr-schema
rank: 1000
slot_uri: rdf:type
domain_of:
- Repertoire
range: RepertoireTypeEnum