Slot: locus_species

Binomial designation of the species from which the locus originates. Typically, this value should be identical to organism, if which case it SHOULD NOT be set explicitly. However, there are valid experimental setups in which the two might differ, e.g. transgenic animal models. If set, this key will overwrite the organism information for all lower layers of the schema.

URI: https://github.com/vdjserver/vdjserver-airr-schema/locus_species

Applicable Classes

Name	Description	Modifies Slot
Rearrangement	Default Rearrangement description	no

Properties

Type and Range

Property	Value
Range	LocusSpeciesOntology
Domain Of	Rearrangement

Cardinality and Requirements

Property	Value

Identifier and Mapping Information

Annotations

property	value
nullable	True

Schema Source

• from schema: https://github.com/vdjserver/vdjserver-airr-schema

Mappings

Mapping Type	Mapped Value
self	https://github.com/vdjserver/vdjserver-airr-schema/locus_species
native	https://github.com/vdjserver/vdjserver-airr-schema/locus_species

LinkML Source

name: locus_species
annotations:
  nullable:
    tag: nullable
    value: true
description: Binomial designation of the species from which the locus originates.
  Typically, this value should be identical to `organism`, if which case it SHOULD
  NOT be set explicitly. However, there are valid experimental setups in which the
  two might differ, e.g. transgenic animal models. If set, this key will overwrite
  the `organism` information for all lower layers of the schema.
from_schema: https://github.com/vdjserver/vdjserver-airr-schema
rank: 1000
domain_of:
- Rearrangement
range: LocusSpeciesOntology