Slot: junction

Junction region nucleotide sequence, where the junction is defined as the CDR3 plus the two flanking conserved codons.

URI: https://github.com/vdjserver/vdjserver-airr-schema/junction

Applicable Classes

Name	Description	Modifies Slot
Rearrangement	Default Rearrangement description	no

Properties

Type and Range

Property	Value
Range	String
Domain Of	Rearrangement

Cardinality and Requirements

Property	Value

Identifier and Mapping Information

Annotations

property	value
nullable	True

Schema Source

• from schema: https://github.com/vdjserver/vdjserver-airr-schema

Mappings

Mapping Type	Mapped Value
self	https://github.com/vdjserver/vdjserver-airr-schema/junction
native	https://github.com/vdjserver/vdjserver-airr-schema/junction

LinkML Source

name: junction
annotations:
  nullable:
    tag: nullable
    value: true
description: Junction region nucleotide sequence, where the junction is defined as
  the CDR3 plus the two flanking conserved codons.
from_schema: https://github.com/vdjserver/vdjserver-airr-schema
rank: 1000
domain_of:
- Rearrangement
range: string