Slot: j_germline_alignment

Aligned J gene germline sequence spanning the same region as the j_sequence_alignment field and including the same set of corrections and spacers (if any).

URI: https://github.com/vdjserver/vdjserver-airr-schema/j_germline_alignment

Applicable Classes

Name	Description	Modifies Slot
Rearrangement	Default Rearrangement description	no

Properties

Type and Range

Property	Value
Range	String
Domain Of	Rearrangement

Cardinality and Requirements

Property	Value

Identifier and Mapping Information

Schema Source

• from schema: https://github.com/vdjserver/vdjserver-airr-schema

Mappings

Mapping Type	Mapped Value
self	https://github.com/vdjserver/vdjserver-airr-schema/j_germline_alignment
native	https://github.com/vdjserver/vdjserver-airr-schema/j_germline_alignment

LinkML Source

name: j_germline_alignment
description: Aligned J gene germline sequence spanning the same region as the j_sequence_alignment
  field and including the same set of corrections and spacers (if any).
from_schema: https://github.com/vdjserver/vdjserver-airr-schema
rank: 1000
domain_of:
- Rearrangement
range: string