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Slot: j_codon_frame

Codon position of the first nucleotide in the 'coding_sequence' field. Mandatory for J genes. Not used for V or D genes. '1' means the sequence is in-frame, '2' means that the first bp is missing from the first codon, and '3' means that the first 2 bp are missing.

URI: https://github.com/vdjserver/vdjserver-airr-schema/j_codon_frame

Applicable Classes

Name Description Modifies Slot
AlleleDescription Details of a putative or confirmed Ig receptor gene/allele inferred from one ... no

Properties

Type and Range

Property Value
Range JCodonFrameEnum
Domain Of AlleleDescription

Cardinality and Requirements

Property Value

Identifier and Mapping Information

Annotations

property value
nullable True

Schema Source

Mappings

Mapping Type Mapped Value
self https://github.com/vdjserver/vdjserver-airr-schema/j_codon_frame
native https://github.com/vdjserver/vdjserver-airr-schema/j_codon_frame

LinkML Source

name: j_codon_frame
annotations:
  nullable:
    tag: nullable
    value: true
description: Codon position of the first nucleotide in the 'coding_sequence' field.
  Mandatory for J genes.  Not used for V or D genes. '1' means the sequence is in-frame,
  '2' means that the first bp is  missing from the first codon, and '3' means that
  the first 2 bp are missing.
from_schema: https://github.com/vdjserver/vdjserver-airr-schema
rank: 1000
domain_of:
- AlleleDescription
range: JCodonFrameEnum