Slot: j_call

J gene with allele. If referring to a known reference sequence in a database the relevant gene/allele nomenclature should be followed (e.g., IGHJ4*02 if using IMGT/GENE-DB).

URI: https://github.com/vdjserver/vdjserver-airr-schema/j_call

Applicable Classes

Name	Description	Modifies Slot
Rearrangement	Default Rearrangement description	no

Properties

Type and Range

Property	Value
Range	String
Domain Of	Rearrangement

Cardinality and Requirements

Property	Value

Identifier and Mapping Information

Annotations

property	value
nullable	True

Schema Source

• from schema: https://github.com/vdjserver/vdjserver-airr-schema

Mappings

Mapping Type	Mapped Value
self	https://github.com/vdjserver/vdjserver-airr-schema/j_call
native	https://github.com/vdjserver/vdjserver-airr-schema/j_call

LinkML Source

name: j_call
annotations:
  nullable:
    tag: nullable
    value: true
description: J gene with allele. If referring to a known reference sequence in a database
  the relevant gene/allele nomenclature should be followed (e.g., IGHJ4*02 if using
  IMGT/GENE-DB).
from_schema: https://github.com/vdjserver/vdjserver-airr-schema
rank: 1000
domain_of:
- Rearrangement
range: string