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Slot: complete_vdj

True if the sequence alignment spans the entire V(D)J region. Meaning, sequence_alignment includes both the first V gene codon that encodes the mature polypeptide chain (i.e., after the leader sequence) and the last complete codon of the J gene (i.e., before the J-C splice site). This does not require an absence of deletions within the internal FWR and CDR regions of the alignment.

URI: https://github.com/vdjserver/vdjserver-airr-schema/complete_vdj

Applicable Classes

Name Description Modifies Slot
Rearrangement Default Rearrangement description no

Properties

Type and Range

Property Value
Range Boolean
Domain Of Rearrangement

Cardinality and Requirements

Property Value

Identifier and Mapping Information

Schema Source

Mappings

Mapping Type Mapped Value
self https://github.com/vdjserver/vdjserver-airr-schema/complete_vdj
native https://github.com/vdjserver/vdjserver-airr-schema/complete_vdj

LinkML Source

name: complete_vdj
description: True if the sequence alignment spans the entire V(D)J region. Meaning,
  sequence_alignment includes both the first V gene codon that encodes the mature
  polypeptide chain (i.e., after the leader sequence) and the last complete codon
  of the J gene (i.e., before the J-C splice site). This does not require an absence
  of deletions within the internal FWR and CDR regions of the alignment.
from_schema: https://github.com/vdjserver/vdjserver-airr-schema
rank: 1000
domain_of:
- Rearrangement
range: boolean