Slot: cell_type

Cell type (source). Most often the type should be "observed," meaning it corresponds to an actual physical sample that was sequenced. Other allowed values are "simulated," i.e. the Cells were generated in silico and there is no linked Subject/Sample metadata, and "inferred" for Cells that are phylogenetically reconstructed from observed sequences. Inferred Cells should be assigned to a Repertoire with repertoire_type=inferred.

URI: rdf:type

Applicable Classes

Name	Description	Modifies Slot
Cell	Default Cell description	no

Properties

Type and Range

Property	Value
Range	CellTypeEnum
Domain Of	Cell
Slot URI	rdf:type

Cardinality and Requirements

Property	Value

Identifier and Mapping Information

Annotations

property	value
nullable	True

Schema Source

• from schema: https://github.com/vdjserver/vdjserver-airr-schema

Mappings

Mapping Type	Mapped Value
self	rdf:type
native	https://github.com/vdjserver/vdjserver-airr-schema/cell_type

LinkML Source

name: cell_type
annotations:
  nullable:
    tag: nullable
    value: true
description: Cell type (source). Most often the type should be "observed," meaning
  it corresponds to an actual physical sample that was sequenced. Other allowed values
  are "simulated," i.e. the Cells were generated in silico and there is no linked
  Subject/Sample metadata, and "inferred" for Cells that are phylogenetically reconstructed
  from observed sequences. Inferred Cells should be assigned to a Repertoire with
  repertoire_type=inferred.
from_schema: https://github.com/vdjserver/vdjserver-airr-schema
rank: 1000
slot_uri: rdf:type
domain_of:
- Cell
range: CellTypeEnum