Slot: cell_species

Binomial designation of the species from which the analyzed cells originate. Typically, this value should be identical to species, in which case it SHOULD NOT be set explicitly. However, there are valid experimental setups in which the two might differ, e.g., chimeric animal models. If set, this key will overwrite the species information for all lower layers of the schema.

URI: https://github.com/vdjserver/vdjserver-airr-schema/cell_species

Applicable Classes

Name	Description	Modifies Slot
CellProcessing	Default CellProcessing description	no
SampleProcessing	Default SampleProcessing description	no

Properties

Type and Range

Property	Value
Range	CellSpeciesOntology
Domain Of	CellProcessing, SampleProcessing

Cardinality and Requirements

Property	Value

Identifier and Mapping Information

Annotations

property	value
nullable	True

Schema Source

• from schema: https://github.com/vdjserver/vdjserver-airr-schema

Mappings

Mapping Type	Mapped Value
self	https://github.com/vdjserver/vdjserver-airr-schema/cell_species
native	https://github.com/vdjserver/vdjserver-airr-schema/cell_species

LinkML Source

name: cell_species
annotations:
  nullable:
    tag: nullable
    value: true
description: Binomial designation of the species from which the analyzed cells originate.
  Typically, this value should be identical to `species`, in which case it SHOULD
  NOT be set explicitly. However, there are valid experimental setups in which the
  two might differ, e.g., chimeric animal models. If set, this key will overwrite
  the `species` information for all lower layers of the schema.
from_schema: https://github.com/vdjserver/vdjserver-airr-schema
rank: 1000
domain_of:
- CellProcessing
- SampleProcessing
range: CellSpeciesOntology