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Class: SequencingRun

Default SequencingRun description

URI: https://github.com/vdjserver/vdjserver-airr-schema/SequencingRun

 classDiagram
    class SequencingRun
    click SequencingRun href "../SequencingRun/"
      AIRRStandards <|-- SequencingRun
        click AIRRStandards href "../AIRRStandards/"

      SequencingRun : sequencing_facility

      SequencingRun : sequencing_files





        SequencingRun --> "0..1" SequencingData : sequencing_files
        click SequencingData href "../SequencingData/"



      SequencingRun : sequencing_kit

      SequencingRun : sequencing_platform

      SequencingRun : sequencing_run_date

      SequencingRun : sequencing_run_id

      SequencingRun : total_reads_passing_qc_filter

Inheritance

Slots

Name Cardinality and Range Description Inheritance
sequencing_run_id 0..1
String		 ID of sequencing run assigned by the sequencing facility direct
total_reads_passing_qc_filter 0..1
Integer		 Number of usable reads for analysis direct
sequencing_platform 0..1
String		 Designation of sequencing instrument used direct
sequencing_facility 0..1
String		 Name and address of sequencing facility direct
sequencing_run_date 0..1
Date		 Date of sequencing run direct
sequencing_kit 0..1
String		 Name, manufacturer, order and lot numbers of sequencing kit direct
sequencing_files 0..1
SequencingData		 Set of sequencing files produced by the sequencing run direct

Identifier and Mapping Information

Schema Source

Mappings

Mapping Type Mapped Value
self https://github.com/vdjserver/vdjserver-airr-schema/SequencingRun
native https://github.com/vdjserver/vdjserver-airr-schema/SequencingRun

LinkML Source

Direct

name: SequencingRun
description: Default SequencingRun description
from_schema: https://github.com/vdjserver/vdjserver-airr-schema
is_a: AIRRStandards
slots:
- sequencing_run_id
- total_reads_passing_qc_filter
- sequencing_platform
- sequencing_facility
- sequencing_run_date
- sequencing_kit
- sequencing_files

Induced

name: SequencingRun
description: Default SequencingRun description
from_schema: https://github.com/vdjserver/vdjserver-airr-schema
is_a: AIRRStandards
attributes:
  sequencing_run_id:
    name: sequencing_run_id
    annotations:
      nullable:
        tag: nullable
        value: true
    description: ID of sequencing run assigned by the sequencing facility
    from_schema: https://github.com/vdjserver/vdjserver-airr-schema
    rank: 1000
    owner: SequencingRun
    domain_of:
    - SequencingRun
    - SampleProcessing
    range: string
  total_reads_passing_qc_filter:
    name: total_reads_passing_qc_filter
    annotations:
      nullable:
        tag: nullable
        value: true
    description: Number of usable reads for analysis
    from_schema: https://github.com/vdjserver/vdjserver-airr-schema
    rank: 1000
    owner: SequencingRun
    domain_of:
    - SequencingRun
    - SampleProcessing
    range: integer
  sequencing_platform:
    name: sequencing_platform
    annotations:
      nullable:
        tag: nullable
        value: true
    description: Designation of sequencing instrument used
    from_schema: https://github.com/vdjserver/vdjserver-airr-schema
    rank: 1000
    owner: SequencingRun
    domain_of:
    - SequencingRun
    - SampleProcessing
    range: string
  sequencing_facility:
    name: sequencing_facility
    annotations:
      nullable:
        tag: nullable
        value: true
    description: Name and address of sequencing facility
    from_schema: https://github.com/vdjserver/vdjserver-airr-schema
    rank: 1000
    owner: SequencingRun
    domain_of:
    - SequencingRun
    - SampleProcessing
    range: string
  sequencing_run_date:
    name: sequencing_run_date
    annotations:
      nullable:
        tag: nullable
        value: true
    description: Date of sequencing run
    from_schema: https://github.com/vdjserver/vdjserver-airr-schema
    rank: 1000
    owner: SequencingRun
    domain_of:
    - SequencingRun
    - SampleProcessing
    range: date
  sequencing_kit:
    name: sequencing_kit
    annotations:
      nullable:
        tag: nullable
        value: true
    description: Name, manufacturer, order and lot numbers of sequencing kit
    from_schema: https://github.com/vdjserver/vdjserver-airr-schema
    rank: 1000
    owner: SequencingRun
    domain_of:
    - SequencingRun
    - SampleProcessing
    range: string
  sequencing_files:
    name: sequencing_files
    annotations:
      nullable:
        tag: nullable
        value: false
    description: Set of sequencing files produced by the sequencing run
    from_schema: https://github.com/vdjserver/vdjserver-airr-schema
    rank: 1000
    owner: SequencingRun
    domain_of:
    - SequencingRun
    - SampleProcessing
    range: SequencingData