Class: Expression

Default Expression description

URI: https://github.com/vdjserver/vdjserver-airr-schema/Expression

 classDiagram
    class Expression
    click Expression href "../Expression/"
      AIRRStandards <|-- Expression
        click AIRRStandards href "../AIRRStandards/"

      Expression : cell_id

      Expression : data_processing_id

      Expression : expression_id

      Expression : property

      Expression : property_type

      Expression : repertoire_id

      Expression : value

Inheritance

AIRRStandards
- Expression

Slots

Name	Cardinality and Range	Description	Inheritance
expression_id	0..1 String	Identifier for the Expression object	direct
cell_id	0..1 String		direct
repertoire_id	0..1 String		direct
data_processing_id	0..1 String		direct
property_type	0..1 String	Keyword describing the property type and detection method used to measure the...	direct
property	0..1 String	Name of the property observed, typically a gene or antibody identifier (and l...	direct
value	0..1 Float	Level at which the property was observed in the experiment (non-normalized)	direct

Identifier and Mapping Information

Schema Source

from schema: https://github.com/vdjserver/vdjserver-airr-schema

Mappings

Mapping Type	Mapped Value
self	https://github.com/vdjserver/vdjserver-airr-schema/Expression
native	https://github.com/vdjserver/vdjserver-airr-schema/Expression

LinkML Source

Direct

name: Expression
description: Default Expression description
from_schema: https://github.com/vdjserver/vdjserver-airr-schema
is_a: AIRRStandards
slots:
- expression_id
- cell_id
- repertoire_id
- data_processing_id
- property_type
- property
- value

Induced

name: Expression
description: Default Expression description
from_schema: https://github.com/vdjserver/vdjserver-airr-schema
is_a: AIRRStandards
attributes:
  expression_id:
    name: expression_id
    annotations:
      nullable:
        tag: nullable
        value: false
    description: Identifier for the Expression object. This identifier must be unique
      within  a given study, but it is recommended that it be a universally unique
      record locator to enable database applications.
    from_schema: https://github.com/vdjserver/vdjserver-airr-schema
    rank: 1000
    owner: Expression
    domain_of:
    - Expression
    range: string
  cell_id:
    name: cell_id
    from_schema: https://github.com/vdjserver/vdjserver-airr-schema
    rank: 1000
    owner: Expression
    domain_of:
    - Rearrangement
    - Node
    - Cell
    - Expression
    - Reactivity
    range: string
  repertoire_id:
    name: repertoire_id
    from_schema: https://github.com/vdjserver/vdjserver-airr-schema
    rank: 1000
    owner: Expression
    domain_of:
    - Repertoire
    - RepertoireFilter
    - Rearrangement
    - Clone
    - Node
    - Cell
    - Expression
    - Reactivity
    - ADCRearrangementLoad
    - ADCDownloadCacheRepertoire
    - StatisticsCacheRepertoire
    - VisualizationDocument
    range: string
  data_processing_id:
    name: data_processing_id
    annotations:
      nullable:
        tag: nullable
        value: true
    from_schema: https://github.com/vdjserver/vdjserver-airr-schema
    rank: 1000
    owner: Expression
    domain_of:
    - DataProcessing
    - Rearrangement
    - Clone
    - Cell
    - Expression
    - Reactivity
    range: string
  property_type:
    name: property_type
    annotations:
      nullable:
        tag: nullable
        value: false
    description: 'Keyword describing the property type and detection method used to
      measure the property value. The following keywords are recommended, but custom
      property types are also valid: "mrna_expression_by_read_count", "protein_expression_by_fluorescence_intensity",
      "antigen_bait_binding_by_fluorescence_intensity", "protein_expression_by_dna_barcode_count"
      and "antigen_bait_binding_by_dna_barcode_count".'
    from_schema: https://github.com/vdjserver/vdjserver-airr-schema
    rank: 1000
    slot_uri: rdf:type
    owner: Expression
    domain_of:
    - Expression
    range: string
  property:
    name: property
    description: Name of the property observed, typically a gene or antibody identifier
      (and label) from a  canonical resource such as Ensembl (e.g. ENSG00000275747,
      IGHV3-79) or  Antibody Registry (ABREG:1236456, Purified anti-mouse/rat/human
      CD27 antibody).
    from_schema: https://github.com/vdjserver/vdjserver-airr-schema
    rank: 1000
    owner: Expression
    domain_of:
    - Expression
    range: string
  value:
    name: value
    annotations:
      nullable:
        tag: nullable
        value: true
    description: Level at which the property was observed in the experiment (non-normalized).
    from_schema: https://github.com/vdjserver/vdjserver-airr-schema
    rank: 1000
    owner: Expression
    domain_of:
    - Expression
    - UserAccountMeta
    - UserVerificationMeta
    - FeedbackMeta
    - PrivateProjectMeta
    - PublicProjectMeta
    - RepertoireMeta
    - RepertoireGroupMeta
    - SubjectMeta
    - SampleProcessingMeta
    - DataProcessingMeta
    - ProjectFileMeta
    - DeletedFileMeta
    - ProjectJobFileMeta
    - ProjectJobMeta
    - ADCRepositorySetMeta
    - ADCAsyncQueryMeta
    - ADCProjectLoadMeta
    - ADCRearrangementLoadMeta
    - ADCDownloadCacheMeta
    - ADCDownloadCacheStudyMeta
    - ADCDownloadCacheRepertoireMeta
    - StatisticsCacheMeta
    - StatisticsCacheStudyMeta
    - StatisticsCacheRepertoireMeta
    - AnalysisDocumentMeta
    range: float